EMDataBank

Data center
EMDataBank is a unified global portal for deposition and retrieval of 3DEM density maps, atomic models, and associated metadata, as well as a resource for news, events, software tools, data standards, validation methods for the 3DEM community.
Source: EMDataBank
Keywords: biology
Size: 122.1GB

Identifiers:

  • ark:/31807/osdc-9d410a22
Last Updated: 2013-06-18 11:17:00 UTC

Access Instructions

All public data sets are available on both commodity internet connections and high speed StarLight/Internet2 connections. We recommend using rsync or UDR to download the data.

Downloading with UDR (UDT enabled rsync)

UDR is a wrapper around rsync that enables rsync to use the high performance UDT network protocol, which can greatly improve download speeds, especially over high speed networks. Once installed, the only change is placing the udr command before the same rsync command you typically use to download the data. UDR is open source and under active development, the most recent version is available on githubAt the moment, UDR is not enabled on the transfer node. The functionality should return shortly. Use rsync in the meantime.

List the contents of EMDataBank:

  • Using rsync: rsync publicdata.opensciencedatacloud.org::ark:/31807/osdc-9d410a22/
  • Using udr: udr rsync publicdata.opensciencedatacloud.org::ark:/31807/osdc-9d410a22/

Download/synchronize EMDataBank:

  • Using rsync: rsync -avzuP publicdata.opensciencedatacloud.org::ark:/31807/osdc-9d410a22/ /path/to/local_copy
  • Using udr: udr rsync -avzuP publicdata.opensciencedatacloud.org::ark:/31807/osdc-9d410a22/ /path/to/local_copy

Download an individual file from EMDataBank:

  • Using rsync: rsync -avzuP publicdata.opensciencedatacloud.org::ark:/31807/osdc-9d410a22/remotefile /path/to/local_copy
  • Using udr: udr rsync -avzuP publicdata.opensciencedatacloud.org::ark:/31807/osdc-9d410a22/remotefile /path/to/local_copy

 

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Profile Info
 

Kalyan Banga200 Posts

I am Kalyan Banga, a Post Graduate in Business Analytics from Indian Institute of Management (IIM) Calcutta, a premier management institute, ranked best B-School in Asia in FT Masters management global rankings. I have spent 6 years in field of Analytics.

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